U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ysaB putative lipoprotein YsaB [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 1450292, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ysaB
    Official Full Name
    putative lipoprotein YsaB
    Primary source
    ECOCYC:G0-10467
    Locus tag
    b4553
    See related
    ASAP:ABE-0285074
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3549
    Summary
    First 17 aa are predicted to be a type II signal peptide, but there is no charged residue. [More information is available at EcoGene: EG14400].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (3725413..3725712, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene glycine--tRNA ligase subunit beta Neighboring gene glycine--tRNA ligase subunit alpha Neighboring gene O-acetyltransferase WecH Neighboring gene PF05360 family inner membrane protein YiaA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    2. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative lipoprotein YsaB

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3725413..3725712 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_588469.1 putative lipoprotein YsaB [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for YP_588469.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T5YNQ9
      Conserved Domains (1) summary
      pfam13983
      Location:25 → 99
      YsaB; YsaB-like lipoprotein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.