U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yfjR putative DNA-binding transcriptional regulator YfjR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947309, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yfjR
    Official Full Name
    putative DNA-binding transcriptional regulator YfjR
    Primary source
    ECOCYC:G7369
    Locus tag
    b2634
    See related
    ASAP:ABE-0008676
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2630
    Summary
    The YjfR family contains a predicted HTH domain. [More information is available at EcoGene: EG13204]. YfjR appears to be involved in biofilm formation. [More information is available at EcoCyc: G7369].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (2769703..2770404)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative GTP-binding protein YfjP Neighboring gene DUF932 domain-containing protein YfjQ Neighboring gene uncharacterized protein YpjK Neighboring gene inner membrane lipoprotein YfjS

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    3. YdgG (TqsA) controls biofilm formation in Escherichia coli K-12 through autoinducer 2 transport. Herzberg M, et al. J Bacteriol, 2006 Jan. PMID 16385049, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of single-species biofilm formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative DNA-binding transcriptional regulator YfjR

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2769703..2770404
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417123.1 putative DNA-binding transcriptional regulator YfjR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417123.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5C9AEE7
      Conserved Domains (1) summary
      COG2378
      Location:6 → 233
      YafY; Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains [Transcription]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.