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    yhcF DUF1120 domain-containing protein YhcF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947735, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yhcF
    Official Full Name
    DUF1120 domain-containing protein YhcF
    Primary source
    ECOCYC:G7673
    Locus tag
    b3219
    See related
    ASAP:ABE-0010564
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3208
    Summary
    First 20 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG12812]. YhcF is a hypothetical protein. [More information is available at EcoCyc: G7673].
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    Genomic context

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    Sequence:
    NC_000913.3 (3366926..3367642)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative fimbrial usher protein YhcD Neighboring gene pseudo Neighboring gene IS5 family transposase and trans-activator Neighboring gene DUF1016 domain-containing protein YhcG Neighboring gene N-acetylneuraminate anomerase Neighboring gene N-acetylmannosamine kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phenotypic screening of Escherichia coli K-12 Tn5 insertion libraries, using whole-genome oligonucleotide microarrays. Winterberg KM, et al. Appl Environ Microbiol, 2005 Jan. PMID 15640221, Free PMC Article
    2. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
    3. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Khil PP, et al. Mol Microbiol, 2002 Apr. PMID 11967071
    4. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DUF1120 domain-containing protein YhcF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3366926..3367642
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417686.1 DUF1120 domain-containing protein YhcF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417686.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P45422
      Conserved Domains (1) summary
      pfam06551
      Location:28 → 138
      DUF1120; Protein of unknown function (DUF1120)
    Nucleotide Protein
    Heading Accession and Version

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