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    CG4617 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31657, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG4617provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0029936
    Locus tag
    Dmel_CG4617
    See related
    AllianceGenome:FB:FBgn0029936
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CC28; Dmel\CG4617
    Summary
    Is expressed in organism. Orthologous to human HMGXB4 (HMG-box containing 4). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG4617 in Genome Data Viewer
    Location:
    6F5-6F5; 1-19 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (7102555..7104491, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (6996588..6998524, complement)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene Sex lethal Neighboring gene long non-coding RNA:CR46494 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene frizzled 4 Neighboring gene long non-coding RNA:CR45532

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Predictive features of gene expression variation reveal mechanistic link with differential expression. Sigalova OM, et al. Mol Syst Biol, 2020 Aug. PMID 32767663, Free PMC Article
    2. Drosophila domino Exhibits Genetic Interactions with a Wide Spectrum of Chromatin Protein-Encoding Loci. Ellis K, et al. PLoS One, 2015. PMID 26555684, Free PMC Article
    3. A network model of the molecular organization of chromatin in Drosophila. van Bemmel JG, et al. Mol Cell, 2013 Feb 21. PMID 23438860
    4. Conservation of caspase substrates across metazoans suggests hierarchical importance of signaling pathways over specific targets and cleavage site motifs in apoptosis. Crawford ED, et al. Cell Death Differ, 2012 Dec. PMID 22918439, Free PMC Article
    5. Identification of novel Drosophila neural precursor genes using a differential embryonic head cDNA screen. Brody T, et al. Mech Dev, 2002 Apr. PMID 11900973

    See all (29) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG4617-PA
    CG4617-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      7102555..7104491 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_132155.3 → NP_572383.1  uncharacterized protein Dmel_CG4617, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_572383.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q960L5, Q9W3S4
      Related
      FBpp0070978
      Conserved Domains (1) summary
      cd00084
      Location:165 → 218
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

    2. NM_001272379.1 → NP_001259308.1  uncharacterized protein Dmel_CG4617, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259308.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q960L5, Q9W3S4
      Conserved Domains (1) summary
      cd00084
      Location:165 → 218
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9W3S4 Q9W3S4

    Gene LinkOut

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