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    CG5439 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34710, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG5439provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0032476
    Locus tag
    Dmel_CG5439
    See related
    AllianceGenome:FB:FBgn0032476
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5439
    Summary
    Predicted to enable phosphatidylinositol binding activity. Is expressed in organism. Orthologous to human SNX29 (sorting nexin 29). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG5439 in Genome Data Viewer
    Location:
    34A8-34A8; 2-47 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (13177150..13178978)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (13177150..13178978)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene Scm-related gene containing four mbt domains Neighboring gene antisense RNA:CR46256 Neighboring gene uncharacterized protein Neighboring gene Alg7 dolichyl-phosphate N-acetylglucosaminephosphotransferase Neighboring gene beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase Neighboring gene uncharacterized protein Neighboring gene Radial spoke head protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RUN domains: a new family of domains involved in Ras-like GTPase signaling. Callebaut I, et al. Trends Biochem Sci, 2001 Feb. PMID 11166556
    2. Molecular analysis of flies selected for aggressive behavior. Dierick HA, et al. Nat Genet, 2006 Sep. PMID 16906161
    3. The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic. Swenson JM, et al. Elife, 2016 Aug 11. PMID 27514026, Free PMC Article
    4. Toward a comprehensive map of the effectors of rab GTPases. Gillingham AK, et al. Dev Cell, 2014 Nov 10. PMID 25453831, Free PMC Article
    5. Protein interaction mapping: a Drosophila case study. Formstecher E, et al. Genome Res, 2005 Mar. PMID 15710747, Free PMC Article

    See all (27) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG5439-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      13177150..13178978
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_135763.3 → NP_609607.1  uncharacterized protein Dmel_CG5439 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_609607.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VK31
      Related
      FBpp0080016
      Conserved Domains (2) summary
      cd07277
      Location:404 → 520
      PX_RUN; The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains
      pfam02759
      Location:64 → 206
      RUN; RUN domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VK31 Q9VK31

    Gene LinkOut

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