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    pat-9 C2H2-type domain-containing protein;Zinc finger protein pat-9 [ Caenorhabditis elegans ]

    Gene ID: 181714, updated on 9-Dec-2024

    Summary

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    Official Symbol
    pat-9
    Official Full Name
    C2H2-type domain-containing protein;Zinc finger protein pat-9
    Primary source
    WormBase:WBGene00003933
    Locus tag
    CELE_T27B1.2
    See related
    AllianceGenome:WB:WBGene00003933
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable chromatin insulator sequence binding activity. Involved in regulation of striated muscle cell differentiation. Located in nucleus. Is expressed in body wall musculature and gonad. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See pat-9 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    6
    Sequence:
    Chromosome: X; NC_003284.9 (16536890..16540213)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Intraflagellar transport protein osm-1 Neighboring gene F-box domain-containing protein Neighboring gene tRNA-Phe Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. C. elegans PAT-9 is a nuclear zinc finger protein critical for the assembly of muscle attachments. Liu Q, et al. Cell Biosci, 2012 May 22. PMID 22616817, Free PMC Article
    2. Genes critical for muscle development and function in Caenorhabditis elegans identified through lethal mutations. Williams BD, et al. J Cell Biol, 1994 Feb. PMID 8106547, Free PMC Article
    3. Sarcomere assembly in C. elegans muscle. Moerman DG, et al. WormBook, 2006 Jan 16. PMID 18050483, Free PMC Article
    4. Molecular structure of sarcomere-to-membrane attachment at M-Lines in C. elegans muscle. Qadota H, et al. J Biomed Biotechnol, 2010. PMID 20414365, Free PMC Article
    5. An integrated strategy to study muscle development and myofilament structure in Caenorhabditis elegans. Meissner B, et al. PLoS Genet, 2009 Jun. PMID 19557190, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables chromatin insulator sequence binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of striated muscle cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in chromosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    C2H2-type domain-containing protein;Zinc finger protein pat-9
    NP_001382748.1
    • Confirmed by transcript evidence
    NP_001382749.1
    • Confirmed by transcript evidence
    NP_001382750.1
    • Confirmed by transcript evidence
    NP_510680.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      16536890..16540213
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_078279.7 → NP_510680.2  Zinc finger protein pat-9 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_510680.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q22829
      Conserved Domains (2) summary
      sd00017
      Location:86 → 106
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:98 → 123
      zf-H2C2_2; Zinc-finger double domain

    2. NM_001395794.1 → NP_001382748.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A8D9I7Y6
      Conserved Domains (1) summary
      sd00017
      Location:86 → 106
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. NM_001395795.1 → NP_001382749.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A8D9MJX7
      Conserved Domains (1) summary
      sd00017
      Location:54 → 74
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. NM_001395796.1 → NP_001382750.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A8D9MHV7
      Conserved Domains (1) summary
      sd00017
      Location:54 → 74
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q22829.2

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