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    C34E10.10 rRNA-processing protein UTP23 homolog [ Caenorhabditis elegans ]

    Gene ID: 175715, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C34E10.10
    Official Full Name
    rRNA-processing protein UTP23 homolog
    Primary source
    WormBase:WBGene00016411
    Locus tag
    CELE_C34E10.10
    See related
    AllianceGenome:WB:WBGene00016411
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be involved in rRNA processing. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in colorectal adenocarcinoma. Orthologous to human UTP23 (UTP23 small subunit processome component). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C34E10.10 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Sequence:
    Chromosome: III; NC_003281.10 (5226818..5227884, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Histone H2A/H2B/H3 domain-containing protein Neighboring gene Annexin Neighboring gene CHCH domain-containing protein;CX9C domain-containing protein Neighboring gene ATP synthase subunit beta, mitochondrial Neighboring gene Protein arginine N-methyltransferase 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables small ribosomal subunit rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    rRNA-processing protein UTP23 homolog
    NP_498110.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      5226818..5227884 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065709.5 → NP_498110.1  rRNA-processing protein UTP23 homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498110.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95QS4
      Conserved Domains (1) summary
      cd09866
      Location:2 → 149
      PIN_Fcf1-Utp23-H; PIN domain of rRNA-processing protein Fcf1- and Utp23-like homologs found in eukaryotes except fungi
    Nucleotide Protein
    Heading Accession and Version

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