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    mdt-26 TFIIS N-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 173960, updated on 9-Dec-2024

    Summary

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    Official Symbol
    mdt-26
    Official Full Name
    TFIIS N-terminal domain-containing protein
    Primary source
    WormBase:WBGene00016115
    Locus tag
    CELE_C25H3.6
    See related
    AllianceGenome:WB:WBGene00016115
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in nucleus. Orthologous to human TCEANC2 (transcription elongation factor A N-terminal and central domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See mdt-26 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    7
    Sequence:
    Chromosome: II; NC_003280.10 (5661181..5665243)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Alpha-(1,3)-fucosyltransferase fut-3 Neighboring gene Intraflagellar transport protein 43 homolog Neighboring gene Secreted protein Neighboring gene Sensor histidine kinase Neighboring gene GST_C_6 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A transcriptional cofactor regulatory network for the C. elegans intestine. Horowitz BB, et al. G3 (Bethesda), 2023 Jul 5. PMID 37119809, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    TFIIS N-terminal domain-containing protein
    NP_740996.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      5661181..5665243
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_170997.5 → NP_740996.2  TFIIS N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_740996.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KYV0
      Conserved Domains (1) summary
      cl00146
      Location:30 → 102
      TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

    RNA

    1. NR_151553.1 RNA Sequence

      Status: REVIEWED

    2. NR_151552.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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