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    Y43H11AL.1 ING domain-containing protein;PHD-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 173408, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y43H11AL.1
    Official Full Name
    ING domain-containing protein;PHD-type domain-containing protein
    Primary source
    WormBase:WBGene00021545
    Locus tag
    CELE_Y43H11AL.1
    See related
    AllianceGenome:WB:WBGene00021545
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable methylated histone binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of NuA4 histone acetyltransferase complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y43H11AL.1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    10
    Sequence:
    Chromosome: II; NC_003280.10 (222700..232739, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene F-box associated domain-containing protein;FBA_2 domain-containing protein Neighboring gene UBX domain-containing protein 3 Neighboring gene ncRNA Neighboring gene Lysosomal amino acid transporter 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Nipped-B-like protein scc-2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A combined binary interaction and phenotypic map of C. elegans cell polarity proteins. Koorman T, et al. Nat Cell Biol, 2016 Mar. PMID 26780296, Free PMC Article
    2. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of NuA4 histone acetyltransferase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ING domain-containing protein;PHD-type domain-containing protein
    NP_001254007.1
    • Confirmed by transcript evidence
    NP_001300600.1
    • Partially confirmed by transcript evidence
    NP_001300601.1
    • Partially confirmed by transcript evidence
    NP_001300602.1
    • Confirmed by transcript evidence
    NP_001379968.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      222700..232739 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001392989.1 → NP_001379968.1  ING domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IAA7

    2. NM_001267078.2 → NP_001254007.1  PHD-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254007.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L057
      Conserved Domains (1) summary
      cd15505
      Location:440 → 486
      PHD_ING; PHD finger found in the inhibitor of growth (ING) protein family

    3. NM_001313671.3 → NP_001300600.1  PHD-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AR60
      Conserved Domains (1) summary
      cd15505
      Location:426 → 472
      PHD_ING; PHD finger found in the inhibitor of growth (ING) protein family

    4. NM_001313672.3 → NP_001300601.1  PHD-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AUR6
      Conserved Domains (1) summary
      cd15505
      Location:115 → 161
      PHD_ING; PHD finger found in the inhibitor of growth (ING) protein family

    5. NM_001313673.3 → NP_001300602.1  PHD-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AX31
      Conserved Domains (1) summary
      cl22851
      Location:18 → 64
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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