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    sdz-30 SKN-1 Dependent Zygotic transcript [ Caenorhabditis elegans ]

    Gene ID: 173198, updated on 9-Dec-2024

    Summary

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    Official Symbol
    sdz-30
    Official Full Name
    SKN-1 Dependent Zygotic transcript
    Primary source
    WormBase:WBGene00011432
    Locus tag
    CELE_T04D3.2
    See related
    AllianceGenome:WB:WBGene00011432
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in autophagy. Located in cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See sdz-30 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003279.8 (13307051..13308685)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Protein sepa-1 Neighboring gene NTF2 domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene tRNA-Thr Neighboring gene Phosphodiesterase;putative 3',5'-cyclic phosphodiesterase pde-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SEPA-1 mediates the specific recognition and degradation of P granule components by autophagy in C. elegans. Zhang Y, et al. Cell, 2009 Jan 23. PMID 19167332
    2. The Caenorhabditis elegans Argonautes ALG-1 and ALG-2: almost identical yet different. Tops BB, et al. Cold Spring Harb Symp Quant Biol, 2006. PMID 17381296
    3. In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics. Chen JX, et al. Mol Cell Proteomics, 2016 May. PMID 26912668, Free PMC Article
    4. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
    5. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SKN-1 Dependent Zygotic transcript
    NP_493341.2
    • Product from WormBase gene class sdz;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      13307051..13308685
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_060940.4 → NP_493341.2  SKN-1 Dependent Zygotic transcript [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      O02297
    Nucleotide Protein
    Heading Accession and Version

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