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    T22H9.1 rRNA biogenesis protein RRP36 [ Caenorhabditis elegans ]

    Gene ID: 24104925, updated on 9-Dec-2024

    Summary

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    Official Symbol
    T22H9.1
    Official Full Name
    rRNA biogenesis protein RRP36
    Primary source
    WormBase:WBGene00020705
    Locus tag
    CELE_T22H9.1
    See related
    AllianceGenome:WB:WBGene00020705
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleus. Predicted to be part of 90S preribosome. Predicted to be active in nucleolus. Is expressed in intestine. Orthologous to human RRP36 (ribosomal RNA processing 36). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See T22H9.1 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    6
    Sequence:
    Chromosome: V; NC_003283.11 (359766..363685)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene PAZ domain-containing protein Neighboring gene Autophagy-related protein 9 Neighboring gene MLt-TeN (mlt-10) related Neighboring gene MLt-TeN (mlt-10) related Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of 90S preribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    rRNA biogenesis protein RRP36
    NP_001294723.1
    • Confirmed by transcript evidence
    NP_001300206.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      359766..363685
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001307794.3 → NP_001294723.1  rRNA biogenesis protein RRP36 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294723.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8MNX1
      Conserved Domains (1) summary
      pfam06102
      Location:279 → 439
      DUF947; Domain of unknown function (DUF947)

    2. NM_001313277.3 → NP_001300206.1  rRNA biogenesis protein RRP36 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AV58
      Conserved Domains (1) summary
      pfam06102
      Location:191 → 351
      DUF947; Domain of unknown function (DUF947)
    Nucleotide Protein
    Heading Accession and Version

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