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    lmd-2 LysM domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 172073, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lmd-2
    Official Full Name
    LysM domain-containing protein
    Primary source
    WormBase:WBGene00015008
    Locus tag
    CELE_B0041.3
    See related
    AllianceGenome:WB:WBGene00015008
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Orthologous to human LYSMD1 (LysM domain containing 1) and LYSMD2 (LysM domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See lmd-2 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    3
    Sequence:
    Chromosome: I; NC_003279.8 (4644642..4645659)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Aspartate aminotransferase Neighboring gene ncRNA Neighboring gene RanBP2-type domain-containing protein Neighboring gene Large ribosomal subunit protein uL4 Neighboring gene ncRNA Neighboring gene Plus3 domain-containing protein Neighboring gene EamA domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Discovery of novel alternatively spliced C. elegans transcripts by computational analysis of SAGE data. Ruzanov P, et al. BMC Genomics, 2007 Nov 30. PMID 18053145, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    LysM domain-containing protein
    NP_491415.2
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      4644642..4645659
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059014.3 → NP_491415.2  LysM domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      O02055
      Conserved Domains (1) summary
      smart00257
      Location:50 → 93
      LysM; Lysin motif
    Nucleotide Protein
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