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    sdz-1 Skn-1 dependent zygotic transcript 1 protein [ Caenorhabditis elegans ]

    Gene ID: 181916, updated on 9-Dec-2024

    Summary

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    Official Symbol
    sdz-1
    Official Full Name
    Skn-1 dependent zygotic transcript 1 protein
    Primary source
    WormBase:WBGene00015129
    Locus tag
    CELE_B0303.8
    See related
    AllianceGenome:WB:WBGene00015129
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in mesendoderm development. Is expressed in several structures, including E; Ea; Ep; MS; and somatic gonad precursor. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See sdz-1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    2
    Sequence:
    Chromosome: III; NC_003281.10 (8699480..8700339, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Nicotinamide N-methyltransferase Neighboring gene putative 3-ketoacyl-CoA thiolase Neighboring gene Uncharacterized protein Neighboring gene SH3 domain-containing protein Neighboring gene Vacuolar protein sorting-associated protein 33A Neighboring gene Solute carrier family 12 protein B0303.11 Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The noncanonical binding site of the MED-1 GATA factor defines differentially regulated target genes in the C. elegans mesendoderm. Broitman-Maduro G, et al. Dev Cell, 2005 Mar. PMID 15737937
    2. Cell-Specific mRNA Profiling of the Caenorhabditis elegans Somatic Gonadal Precursor Cells Identifies Suites of Sex-Biased and Gonad-Enriched Transcripts. Kroetz MB, et al. G3 (Bethesda), 2015 Oct 23. PMID 26497144, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in mesendoderm development IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in mesendoderm development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Skn-1 dependent zygotic transcript 1 protein
    NP_498919.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      8699480..8700339 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_066518.6 → NP_498919.2  Skn-1 dependent zygotic transcript 1 protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498919.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P34259
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P34259.1

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