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    syf-2 Pre-mRNA-splicing factor syf-2 [ Caenorhabditis elegans ]

    Gene ID: 176003, updated on 9-Dec-2024

    Summary

    Official Symbol
    syf-2
    Official Full Name
    Pre-mRNA-splicing factor syf-2
    Primary source
    WormBase:WBGene00019402
    Locus tag
    CELE_K04G7.11
    See related
    AllianceGenome:WB:WBGene00019402
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of Prp19 complex; catalytic step 2 spliceosome; and post-mRNA release spliceosomal complex. Orthologous to human SYF2 (SYF2 pre-mRNA splicing factor). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See syf-2 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Sequence:
    Chromosome: III; NC_003281.10 (7161160..7162115, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Deoxynucleoside kinase domain-containing protein;NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial Neighboring gene U1 small nuclear ribonucleoprotein 70 kDa Neighboring gene Integrase zinc-binding domain-containing protein Neighboring gene long-chain-fatty-acid--CoA ligase

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of Prp19 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of catalytic step 2 spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    part_of post-mRNA release spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Pre-mRNA-splicing factor syf-2
    NP_001379563.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      7161160..7162115 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001392137.1NP_001379563.1  Pre-mRNA-splicing factor syf-2 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q09385, Q09386
      Conserved Domains (1) summary
      pfam08231
      Location:79229
      SYF2; SYF2 splicing factor