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    col-8 Cuticle collagen 8 [ Caenorhabditis elegans ]

    Gene ID: 175981, updated on 9-Dec-2024

    Summary

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    Official Symbol
    col-8
    Official Full Name
    Cuticle collagen 8
    Primary source
    WormBase:WBGene00000597
    Locus tag
    CELE_F11H8.3
    See related
    AllianceGenome:WB:WBGene00000597
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See col-8 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Sequence:
    Chromosome: III; NC_003281.10 (7019583..7020600, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene non-specific serine/threonine protein kinase Neighboring gene Lipid-binding serum glycoprotein C-terminal domain-containing protein Neighboring gene Gamma-aminobutyric acid receptor subunit beta Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene NEDD8-activating enzyme E1 catalytic subunit Neighboring gene WAPL domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence comparisons of developmentally regulated collagen genes of Caenorhabditis elegans. Cox GN, et al. Gene, 1989. PMID 2753356
    2. Domain organization and intron positions in Caenorhabditis elegans collagen genes: the 54-bp module hypothesis revisited. Fields C. J Mol Evol, 1988 Dec-1989 Feb. PMID 3148742
    3. Genetic mapping of Caenorhabditis elegans collagen genes using DNA polymorphisms as phenotypic markers. Cox GN, et al. Genetics, 1985 Mar. PMID 3979813, Free PMC Article
    4. Molecular and biochemical aspects of nematode collagens. Cox GN. J Parasitol, 1992 Feb. PMID 1738051
    5. Molecular biology of the cuticle collagen gene families of Caenorhabditis elegans and Haemonchus contortus. Cox GN. Acta Trop, 1990 Jul. PMID 1978527

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables structural constituent of cuticle IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Cuticle collagen 8
    NP_001370389.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      7019583..7020600 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001382906.2 → NP_001370389.1  Cuticle collagen 8 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P18833, Q19359
      Conserved Domains (1) summary
      smart01088
      Location:4 → 56
      Col_cuticle_N; Nematode cuticle collagen N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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