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    lmd-5 LysM Domain (peptidoglycan binding) protein [ Caenorhabditis elegans ]

    Gene ID: 187942, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lmd-5
    Official Full Name
    LysM Domain (peptidoglycan binding) protein
    Primary source
    WormBase:WBGene00020141
    Locus tag
    CELE_T01C4.1
    See related
    AllianceGenome:WB:WBGene00020141
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable chitin binding activity and hydrolase activity, acting on glycosyl bonds. Predicted to be involved in carbohydrate metabolic process and rejection of self pollen. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See lmd-5 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    12
    Sequence:
    Chromosome: V; NC_003283.11 (7123658..7128961)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene pseudo Neighboring gene GH18 domain-containing protein Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Changes in miRNA expression profile of space-flown Caenorhabditis elegans during Shenzhou-8 mission. Xu D, et al. Life Sci Space Res (Amst), 2014 Apr. PMID 26432588
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables chitin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity, acting on glycosyl bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in rejection of self pollen IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    LysM Domain (peptidoglycan binding) protein
    NP_001309512.1
    • Product from WormBase gene class lmd;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      7123658..7128961
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001322564.2 → NP_001309512.1  LysM Domain (peptidoglycan binding) protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q94298
      Conserved Domains (5) summary
      smart00257
      Location:22 → 65
      LysM; Lysin motif
      cd10909
      Location:1388 → 1435
      ChtBD1_GH18_2; Hevein or type 1 chitin binding domain (ChtBD1) subfamily; in some members co-occurs with family 18 glycosyl hydrolases
      smart00636
      Location:991 → 1336
      Glyco_18; Glyco_18 domain
      pfam05938
      Location:851 → 944
      Self-incomp_S1; Plant self-incompatibility protein S1
      cl10447
      Location:992 → 1336
      GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...
    Nucleotide Protein
    Heading Accession and Version

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