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    sqt-2 Nematode cuticle collagen N-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 173382, updated on 9-Dec-2024

    Summary

    Official Symbol
    sqt-2
    Official Full Name
    Nematode cuticle collagen N-terminal domain-containing protein
    Primary source
    WormBase:WBGene00005017
    Locus tag
    CELE_C01B12.1
    See related
    AllianceGenome:WB:WBGene00005017
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Predicted to be located in membrane. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See sqt-2 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003280.10 (23325..24458)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene SAND domain-containing protein Neighboring gene ncRNA Neighboring gene Coiled-coil domain-containing protein 86 Neighboring gene Uncharacterized protein Neighboring gene Snurportin-1

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables structural constituent of cuticle IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Nematode cuticle collagen N-terminal domain-containing protein
    NP_493635.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      23325..24458
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_061234.6NP_493635.1  Nematode cuticle collagen N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_493635.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O17209
      Conserved Domains (2) summary
      pfam01391
      Location:205265
      Collagen; Collagen triple helix repeat (20 copies)
      smart01088
      Location:1264
      Col_cuticle_N; Nematode cuticle collagen N-terminal domain