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    nhr-15 Nuclear Hormone Receptor family [ Caenorhabditis elegans ]

    Gene ID: 178558, updated on 9-Dec-2024

    Summary

    Official Symbol
    nhr-15
    Official Full Name
    Nuclear Hormone Receptor family
    Primary source
    WormBase:WBGene00003614
    Locus tag
    CELE_F33E11.1
    See related
    AllianceGenome:WB:WBGene00003614
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is expressed in head muscle and pharynx. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See nhr-15 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    7
    Sequence:
    Chromosome: V; NC_003283.11 (312721..323650)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 1 regulatory subunit 21 N-terminal domain-containing protein Neighboring gene PHD finger protein 10;PHD-type domain-containing protein Neighboring gene ncRNA Neighboring gene ABC transporter domain-containing protein Neighboring gene ncRNA Neighboring gene DM domain-containing protein

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Nuclear Hormone Receptor family
    NP_001379919.1
    • Product from WormBase gene class nhr;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      312721..323650
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001392465.1NP_001379919.1  Nuclear Hormone Receptor family [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      O61854
      Conserved Domains (2) summary
      smart00399
      Location:32105
      ZnF_C4; c4 zinc finger in nuclear hormone receptors
      smart00430
      Location:182340
      HOLI; Ligand binding domain of hormone receptors

    RNA

    1. NR_132474.1 RNA Sequence

      Status: REVIEWED