U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    STX17-DT STX17 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 441461, updated on 22-Oct-2024

    Summary

    Official Symbol
    STX17-DTprovided by HGNC
    Official Full Name
    STX17 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:51174
    See related
    Ensembl:ENSG00000271086 AllianceGenome:HGNC:51174
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    STX17-AS1
    Expression
    Broad expression in testis (RPKM 2.1), thyroid (RPKM 1.7) and 21 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See STX17-DT in Genome Data Viewer
    Location:
    9q31.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (99886317..99906601, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (112057953..112078251, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (102648599..102668883, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101928438 Neighboring gene uncharacterized LOC124902234 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:102431793-102432372 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:102437510-102438010 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28715 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:102581295-102581888 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:102581889-102582482 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20129 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:102584885-102585397 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20130 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:102595258-102596457 Neighboring gene nuclear receptor subfamily 4 group A member 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20131 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28716 Neighboring gene NANOG hESC enhancer GRCh37_chr9:102678782-102679392 Neighboring gene syntaxin 17 Neighboring gene endoplasmic reticulum protein 44 Neighboring gene UPF3A pseudogene 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038853.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC030123, BG460404
      Related
      ENST00000725653.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      99886317..99906601 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      112057953..112078251 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)