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    [ Saccharomyces cerevisiae S288C ]

    Gene ID: 855007, updated on 9-Dec-2024

    Summary

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    Primary source
    SGD:S000006729
    Locus tag
    YNCM0009C
    See related
    AllianceGenome:SGD:S000006729
    Gene type
    tRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables ribosome binding activity and translation repressor activity. Involved in regulation of translation in response to stress. Predicted to be located in cytosol. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    Location:
    chromosome: XIII
    Sequence:
    Chromosome: XIII; NC_001145.3 (259158..259239, complement)

    Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcription factor YAP1 Neighboring gene Gis4p Neighboring gene tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase Neighboring gene lactoylglutathione lyase GLO1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001145.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. tRNA-derived short RNAs bind to Saccharomyces cerevisiae ribosomes in a stress-dependent manner and inhibit protein synthesis in vitro. Bąkowska-Żywicka K, et al. FEMS Yeast Res, 2016 Sep. PMID 27609601, Free PMC Article
    2. tRNA genes and retroelements in the yeast genome. Hani J, et al. Nucleic Acids Res, 1998 Feb 1. PMID 9443958, Free PMC Article
    3. Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. Percudani R, et al. J Mol Biol, 1997 May 2. PMID 9159473
    4. A unique nucleosome arrangement, maintained actively by chromatin remodelers facilitates transcription of yeast tRNA genes. Kumar Y, et al. BMC Genomics, 2013 Jun 17. PMID 23767421, Free PMC Article
    5. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Lowe TM, et al. Nucleic Acids Res, 1997 Mar 1. PMID 9023104, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    • Serine tRNA (tRNA-Ser), predicted by tRNAscan-SE analysis

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables ribosome binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables translation repressor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables triplet codon-amino acid adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables triplet codon-amino acid adaptor activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of translation in response to stress IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in translational elongation IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IC
    Inferred by Curator
    more info
    		 PubMed 

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