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    Lhx1os LIM homeobox 1, opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 78365, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Lhx1osprovided by MGI
    Official Full Name
    LIM homeobox 1, opposite strandprovided by MGI
    Primary source
    MGI:MGI:1925615
    See related
    Ensembl:ENSMUSG00000087211 AllianceGenome:MGI:1925615
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Lhx1as; ln-CR7; 1500016L03Rik
    Summary
    Is expressed in forebrain and genitourinary system. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in cerebellum adult (RPKM 13.2), CNS E14 (RPKM 9.3) and 4 other tissues See more
    Orthologs
    all
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    Genomic context

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    See Lhx1os in Genome Data Viewer
    Location:
    11 C; 11 51.31 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (84416486..84426657)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (84525660..84535831)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene apoptosis antagonizing transcription factor Neighboring gene STARR-seq mESC enhancer starr_30220 Neighboring gene LIM homeobox protein 1 Neighboring gene STARR-seq mESC enhancer starr_30221 Neighboring gene RIKEN cDNA 1700109G15 gene Neighboring gene STARR-seq mESC enhancer starr_30223 Neighboring gene STARR-seq mESC enhancer starr_30224 Neighboring gene STARR-positive B cell enhancer ABC_E3984 Neighboring gene STARR-positive B cell enhancer ABC_E375 Neighboring gene STARR-positive B cell enhancer ABC_E3985 Neighboring gene mitochondrial rRNA methyltransferase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A KO mouse model for the lncRNA Lhx1os produces motor neuron alterations and locomotor impairment. Pellegrini F, et al. iScience, 2023 Jan 20. PMID 36647387, Free PMC Article
    2. Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling. Thiagarajan RD, et al. BMC Genomics, 2011 Sep 5. PMID 21888672, Free PMC Article
    3. Mouse knockout models reveal largely dispensable but context-dependent functions of lncRNAs during development. Han X, et al. J Mol Cell Biol, 2018 Apr 1. PMID 29420831
    4. Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons. Li J, et al. PLoS Genet, 2021 Mar. PMID 33760820, Free PMC Article
    5. Analysis of early nephron patterning reveals a role for distal RV proliferation in fusion to the ureteric tip via a cap mesenchyme-derived connecting segment. Georgas K, et al. Dev Biol, 2009 Aug 15. PMID 19501082

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038057.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL603708
      Related
      ENSMUST00000339939.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      84416486..84426657
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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