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    ecpD fimbrial adhesin EcpD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947349, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ecpD
    Official Full Name
    fimbrial adhesin EcpD
    Primary source
    ECOCYC:G6161
    Locus tag
    b0290
    See related
    ASAP:ABE-0001002
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0289; matE; yagW
    Summary
    YagW is a hypothetical protein. [More information is available at EcoCyc: G6161].
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    Genomic context

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    Sequence:
    NC_000913.3 (305174..306817, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF1440 domain-containing inner membrane protein YagU Neighboring gene putative metal-chelating domain-containing protein YkgJ Neighboring gene putative fimbrial chaperone EcpE Neighboring gene putative fimbrial usher protein EcpC Neighboring gene putative fimbrial chaperone EcpB Neighboring gene common pilus major subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. matB, a common fimbrillin gene of Escherichia coli, expressed in a genetically conserved, virulent clonal group. Pouttu R, et al. J Bacteriol, 2001 Aug. PMID 11466275, Free PMC Article
    2. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
    3. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in pilus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    fimbrial adhesin EcpD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      305174..306817 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414824.1 fimbrial adhesin EcpD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414824.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A377DWW3
    Nucleotide Protein
    Heading Accession and Version

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