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    htrE putative fimbrial usher protein HtrE [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944819, updated on 3-Dec-2024

    Summary

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    Official Symbol
    htrE
    Official Full Name
    putative fimbrial usher protein HtrE
    Primary source
    ECOCYC:EG11972
    Locus tag
    b0139
    See related
    ASAP:ABE-0000479
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0138
    Summary
    FimD family.First 29 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG11972]. HtrE has similarity to PapC, which is a type II pilin porin . [More information is available at EcoCyc: EG11972].
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    Genomic context

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    Sequence:
    NC_000913.3 (152829..155426, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative fimbrial protein YadL Neighboring gene putative fimbrial protein YadM Neighboring gene putative fimbrial chaperone YadV Neighboring gene putative fimbrial protein YadN

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional analysis of Escherichia coli Yad fimbriae reveals their potential role in environmental persistence. Larsonneur F, et al. Environ Microbiol, 2016 Dec. PMID 27696649
    2. Evidence for a novel domain of bacterial outer membrane ushers. Capitani G, et al. Proteins, 2006 Dec 1. PMID 17066380
    3. Bacterial outer membrane ushers contain distinct targeting and assembly domains for pilus biogenesis. Thanassi DG, et al. J Bacteriol, 2002 Nov. PMID 12399496, Free PMC Article
    4. Analysis of the requirements for pilus biogenesis at the outer membrane usher and the function of the usher C-terminus. So SS, et al. Mol Microbiol, 2006 Apr. PMID 16573686
    5. The outer membrane usher forms a twin-pore secretion complex. Li H, et al. J Mol Biol, 2004 Dec 10. PMID 15561151

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables fimbrial usher porin activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables fimbrial usher porin activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables fimbrial usher porin activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell adhesion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pilus assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in pilus assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cell outer membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cell outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative fimbrial usher protein HtrE

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      152829..155426 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414681.1 putative fimbrial usher protein HtrE [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414681.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6N0II72, A0A8H9XL39
      Conserved Domains (1) summary
      PRK09828
      Location:1 → 865
      PRK09828; putative fimbrial outer membrane usher protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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