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    ecpC putative fimbrial usher protein EcpC [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947606, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ecpC
    Official Full Name
    putative fimbrial usher protein EcpC
    Primary source
    ECOCYC:G6162
    Locus tag
    b0291
    See related
    ASAP:ABE-0001005
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0290; matD; yagX
    Summary
    Contains PPE repeats. [More information is available at EcoGene: EG13563].
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    Genomic context

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    Sequence:
    NC_000913.3 (306807..309332, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative metal-chelating domain-containing protein YkgJ Neighboring gene putative fimbrial chaperone EcpE Neighboring gene fimbrial adhesin EcpD Neighboring gene putative fimbrial chaperone EcpB Neighboring gene common pilus major subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chaperone-subunit-usher interactions required for donor strand exchange during bacterial pilus assembly. Barnhart MM, et al. J Bacteriol, 2003 May. PMID 12700251, Free PMC Article
    2. Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria. Casadio R, et al. Protein Sci, 2003 Jun. PMID 12761386, Free PMC Article
    3. matB, a common fimbrillin gene of Escherichia coli, expressed in a genetically conserved, virulent clonal group. Pouttu R, et al. J Bacteriol, 2001 Aug. PMID 11466275, Free PMC Article
    4. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article
    5. Fiber formation across the bacterial outer membrane by the chaperone/usher pathway. Remaut H, et al. Cell, 2008 May 16. PMID 18485872, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative fimbrial usher protein EcpC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      306807..309332 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414825.1 putative fimbrial usher protein EcpC [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414825.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8H9XJT5
      Conserved Domains (3) summary
      PRK15310
      Location:230 → 824
      PRK15310; fimbrial outer membrane usher protein TcfC; Provisional
      pfam15976
      Location:732 → 824
      CooC_C; CS1-pili formation C-terminal
      pfam16967
      Location:283 → 350
      TcfC; E-set like domain
    Nucleotide Protein
    Heading Accession and Version

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