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    ybjD DUF2813 domain-containing protein YbjD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945498, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybjD
    Official Full Name
    DUF2813 domain-containing protein YbjD
    Primary source
    ECOCYC:G6459
    Locus tag
    b0876
    See related
    ASAP:ABE-0002980
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0867
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    Genomic context

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    Sequence:
    NC_000913.3 (916473..918131)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene L-lysine/thialysine exporter Neighboring gene water channel AqpZ Neighboring gene DUF535 domain-containing protein YbjX Neighboring gene ABC-type tripartite efflux pump membrane fusion protein Neighboring gene ABC-type tripartite efflux pump ATP binding/membrane subunit Neighboring gene DNA replication inhibitor CspD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    2. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    3. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    4. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA synthesis involved in DNA repair IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in double-strand break repair IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    DUF2813 domain-containing protein YbjD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      916473..918131
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415397.1 DUF2813 domain-containing protein YbjD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415397.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9AKX2
      Conserved Domains (1) summary
      COG3593
      Location:1 → 552
      YbjD; Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair]
    Nucleotide Protein
    Heading Accession and Version

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