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    yijD DUF1422 domain-containing inner membrane protein YijD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948459, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yijD
    Official Full Name
    DUF1422 domain-containing inner membrane protein YijD
    Primary source
    ECOCYC:EG11395
    Locus tag
    b3964
    See related
    ASAP:ABE-0012981
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3956
    Summary
    YijD is an inner membrane protein with four predicted transmembrane domains. [More information is available at EcoCyc: EG11395].
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    Genomic context

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    Sequence:
    NC_000913.3 (4161771..4162130)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene DNA-binding transcriptional dual regulator OxyR Neighboring gene soluble pyridine nucleotide transhydrogenase Neighboring gene DNA-binding transcriptional repressor FabR Neighboring gene tRNA m(5)U54 methyltransferase Neighboring gene cobalamin outer membrane transporter Neighboring gene glutamate racemase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Physical map of the oxyR-trmA region (minute 89.3) of the Escherichia coli chromosome. Gustafsson C, et al. J Bacteriol, 1992 Dec. PMID 1447162, Free PMC Article
    2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    3. Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes. Blattner FR, et al. Nucleic Acids Res, 1993 Nov 25. PMID 8265357, Free PMC Article
    4. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    5. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DUF1422 domain-containing inner membrane protein YijD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4161771..4162130
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418399.1 DUF1422 domain-containing inner membrane protein YijD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418399.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A792HVT7
      Conserved Domains (1) summary
      PRK11056
      Location:1 → 119
      PRK11056; YijD family membrane protein
    Nucleotide Protein
    Heading Accession and Version

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