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    yjhH putative 2-dehydro-3-deoxy-D-pentonate aldolase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948825, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yjhH
    Official Full Name
    putative 2-dehydro-3-deoxy-D-pentonate aldolase
    Primary source
    ECOCYC:G7911
    Locus tag
    b4298
    See related
    ASAP:ABE-0014089
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4287
    Summary
    AFMB Structural Genomics target Number 50 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG12550].
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    Genomic context

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    Sequence:
    NC_000913.3 (4524105..4525010, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative transporter YjhF Neighboring gene D-xylonate dehydratase Neighboring gene putative DNA-binding transcriptional regulator YjhI Neighboring gene putative DNA-binding transcriptional regulator SgcR

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global gene expression profiling in Escherichia coli K12: effects of oxygen availability and ArcA. Salmon KA, et al. J Biol Chem, 2005 Apr 15. PMID 15699038
    2. Biosynthesis of ethylene glycol in Escherichia coli. Liu H, et al. Appl Microbiol Biotechnol, 2013 Apr. PMID 23233208
    3. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 2-dehydro-3-deoxy-D-pentonate aldolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables 2-dehydro-3-deoxy-D-pentonate aldolase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within aldonic acid catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    putative 2-dehydro-3-deoxy-D-pentonate aldolase
    NP_418718.4

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4524105..4525010 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418718.4 putative 2-dehydro-3-deoxy-D-pentonate aldolase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418718.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0J8Y3K4, A0AAU8ZVQ7
      Conserved Domains (1) summary
      pfam00701
      Location:3 → 296
      DHDPS; Dihydrodipicolinate synthetase family
    Nucleotide Protein
    Heading Accession and Version

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