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    CG34376 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42638, updated on 27-Dec-2024

    Summary

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    Official Symbol
    CG34376provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0085405
    Locus tag
    Dmel_CG34376
    See related
    AllianceGenome:FB:FBgn0085405
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG13845; CG13846; CG13851; CG31160; Dmel\CG34376
    Old locus tag
    CG13845; CG31160; Dmel_CG13845; Dmel_CG31160
    Summary
    Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in amnioserosa; gut section; somatic trunk mesoderm derivative; trunk mesoderm; and yolk nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG34376 in Genome Data Viewer
    Location:
    94A14-94A15; 3-74 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (22448099..22460749)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (18273821..18286471)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Regulatory particle non-ATPase 7 Neighboring gene Adaptor Protein complex 2, mu subunit Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rhodopsin formation in Drosophila is dependent on the PINTA retinoid-binding protein. Wang T, et al. J Neurosci, 2005 May 25. PMID 15917458, Free PMC Article
    2. Morphological and molecular characterization of adult midgut compartmentalization in Drosophila. Buchon N, et al. Cell Rep, 2013 May 30. PMID 23643535
    3. Drosophila activating transcription factor-2 is involved in stress response via activation by p38, but not c-Jun NH(2)-terminal kinase. Sano Y, et al. Mol Biol Cell, 2005 Jun. PMID 15788564, Free PMC Article
    4. A large-scale resource for tissue-specific CRISPR mutagenesis in Drosophila. Port F, et al. Elife, 2020 Feb 13. PMID 32053108, Free PMC Article
    5. A modERN resource: identification of Drosophila transcription factor candidate target genes using RNAi. Fisher WW, et al. Genetics, 2023 Apr 6. PMID 36652461, Free PMC Article

    See all (33) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    mobile_element

    • Loc: 22450601-22453178 mobile_element_type = transposon:FB{}CG34376[FB]

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG34376-PA
    CG34376-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      22448099..22460749
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001104402.2 → NP_001097872.1  uncharacterized protein Dmel_CG34376, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001097872.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VD04
      Conserved Domains (3) summary
      smart00225
      Location:31 → 115
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00651
      Location:20 → 113
      BTB; BTB/POZ domain
      pfam04500
      Location:391 → 451
      FLYWCH; FLYWCH zinc finger domain

    2. NM_170013.3 → NP_732741.1  uncharacterized protein Dmel_CG34376, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_732741.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0AVX3, A0AVX5, Q9VD05
      Related
      FBpp0111520
      Conserved Domains (3) summary
      smart00225
      Location:31 → 115
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00651
      Location:20 → 113
      BTB; BTB/POZ domain
      pfam04500
      Location:390 → 443
      FLYWCH; FLYWCH zinc finger domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7YTX4 Q7YTX4
    Q9VD04 Q9VD04
    Q9VD05 Q9VD05

    Gene LinkOut

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