U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CG11980 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41078, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CG11980provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0037652
    Locus tag
    Dmel_CG11980
    See related
    AllianceGenome:FB:FBgn0037652
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-WO0118547.327; Dmel\CG11980
    Summary
    Predicted to enable 3'-5'-RNA exonuclease activity. Predicted to be involved in mRNA processing; mitochondrial RNA metabolic process; and rRNA processing. Predicted to be active in mitochondrial matrix; nucleolus; and nucleoplasm. Is expressed in several structures, including adult head; embryonic anal pad; embryonic/larval midgut primordium; gut section; and hindgut proper primordium. Orthologous to human MYG1 (MYG1 exonuclease). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CG11980 in Genome Data Viewer
    Location:
    85C2-85C2; 3-48 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (9004017..9005331)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (4829739..4831053)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Proteasome beta3 subunit Neighboring gene Iruka Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Drosophila ventral furrow morphogenesis: a proteomic analysis. Gong L, et al. Development, 2004 Feb. PMID 14711877
    2. E(var)3-9 of Drosophila melanogaster encodes a zinc finger protein. Weiler KS. Genetics, 2007 Sep. PMID 17660546, Free PMC Article
    3. Building proteomic pathways using Drosophila ventral furrow formation as a model. Puri M, et al. Mol Biosyst, 2008 Nov. PMID 18931788
    4. Genomic profiling and expression studies reveal both positive and negative activities for the Drosophila Myb MuvB/dREAM complex in proliferating cells. Georlette D, et al. Genes Dev, 2007 Nov 15. PMID 17978103, Free PMC Article
    5. Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library. Lowe N, et al. Development, 2014 Oct. PMID 25294943, Free PMC Article

    See all (33) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables 3'-5'-RNA exonuclease activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA processing ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in mitochondrial RNA metabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in rRNA processing ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in mitochondrial matrix ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in nucleolus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in nucleoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    Names
    CG11980-PA
    CG11980-PB
    CG11980-PC

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      9004017..9005331
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_141600.2 → NP_649857.1  uncharacterized protein Dmel_CG11980, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_649857.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8INP9, Q8MQQ5
      Related
      FBpp0081443
      Conserved Domains (1) summary
      pfam03690
      Location:28 → 352
      UPF0160; uncharacterized protein family (UPF0160)

    2. NM_169250.2 → NP_731302.1  uncharacterized protein Dmel_CG11980, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_731302.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8INP8, Q8MQQ5
      Related
      FBpp0081442
      Conserved Domains (1) summary
      pfam03690
      Location:27 → 351
      UPF0160; uncharacterized protein family (UPF0160)

    3. NM_169251.1 → NP_731303.2  uncharacterized protein Dmel_CG11980, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_731303.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8MQQ5, Q9VHI8
      Related
      FBpp0081444, FBtr0081964
      Conserved Domains (1) summary
      pfam03690
      Location:14 → 338
      UPF0160; uncharacterized protein family (UPF0160)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8INP8 Q8INP8
    Q8INP9 Q8INP9
    Q8MQQ5 Q8MQQ5
    Q9VHI8 Q9VHI8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools