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    Cfhr3 complement factor H-related 3 [ Mus musculus (house mouse) ]

    Gene ID: 624286, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Cfhr3provided by MGI
    Official Full Name
    complement factor H-related 3provided by MGI
    Primary source
    MGI:MGI:3647418
    See related
    Ensembl:ENSMUSG00000135477 AllianceGenome:MGI:3647418
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG624286
    Expression
    Biased expression in testis adult (RPKM 3.3), liver adult (RPKM 1.5) and 1 other tissue See more
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    Genomic context

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    See Cfhr3 in Genome Data Viewer
    Location:
    1 F; 1 61.62 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (139512032..139588744, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (139584294..139661006, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene coagulation factor XIII, beta subunit Neighboring gene complement factor H-related 1 Neighboring gene STARR-seq mESC enhancer starr_02482 Neighboring gene STARR-seq mESC enhancer starr_02483 Neighboring gene STARR-seq mESC enhancer starr_02484 Neighboring gene STARR-seq mESC enhancer starr_02485 Neighboring gene predicted gene, 26271 Neighboring gene STARR-seq mESC enhancer starr_02486 Neighboring gene STARR-seq mESC enhancer starr_02487 Neighboring gene complement factor H-related 4 Neighboring gene STARR-seq mESC enhancer starr_02488

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Potential readthrough

    Included gene: Cfhr4

    Homology

    General protein information

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    Preferred Names
    complement factor H-related 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001374101.1 → NP_001361030.1  complement factor H-related 3 isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AL837518
      Related
      ENSMUST00000330345.1
      Conserved Domains (1) summary
      PHA02927
      Location:151 → 386
      PHA02927; secreted complement-binding protein; Provisional

    2. NM_001374102.1 → NP_001361031.1  complement factor H-related 3 isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AL837518
      Related
      ENSMUST00000330347.1
      Conserved Domains (1) summary
      PHA02927
      Location:23 → 262
      PHA02927; secreted complement-binding protein; Provisional

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      139512032..139588744 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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