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    Defb2 defensin beta 2 [ Mus musculus (house mouse) ]

    Gene ID: 13215, updated on 9-Dec-2024

    Summary

    Official Symbol
    Defb2provided by MGI
    Official Full Name
    defensin beta 2provided by MGI
    Primary source
    MGI:MGI:1338754
    See related
    Ensembl:ENSMUSG00000006570 AllianceGenome:MGI:1338754
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BD-2
    Summary
    Predicted to enable CCR6 chemokine receptor binding activity. Acts upstream of or within defense response to bacterium. Predicted to be located in extracellular region. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward genital fat pad adult (RPKM 84.7) See more
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    Genomic context

    See Defb2 in Genome Data Viewer
    Location:
    8 A2; 8 10.45 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (22329942..22333519)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (21839926..21843482)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene 15316 Neighboring gene defensin beta 50 Neighboring gene defensin beta 10 Neighboring gene defensin beta 9

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC129140, MGC129141

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables CCR6 chemokine receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in defense response to Gram-negative bacterium IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in defense response to Gram-positive bacterium IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within defense response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in innate immune response in mucosa IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_010030.2NP_034160.1  beta-defensin 2 precursor

      See identical proteins and their annotated locations for NP_034160.1

      Status: VALIDATED

      Source sequence(s)
      AL590619
      Consensus CDS
      CCDS40284.1
      UniProtKB/Swiss-Prot
      P82020
      UniProtKB/TrEMBL
      Q32MH3
      Related
      ENSMUSP00000006745.4, ENSMUST00000006745.4
      Conserved Domains (1) summary
      pfam00711
      Location:3668
      Defensin_beta; Beta defensin

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      22329942..22333519
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)