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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001161420.1 → NP_001154892.1 very low-density lipoprotein receptor isoform b precursor
See identical proteins and their annotated locations for NP_001154892.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an in-frame exon in the 3' coding region, compared to variant 1. This results in a shorter protein (isoform b), compared to isoform a.
- Source sequence(s)
-
AC119982, AK036010, AK076172, AK136838, BU504025, U06670
- Consensus CDS
-
CCDS50411.1
- UniProtKB/TrEMBL
- Q3UVX6, Q91YY0
- Related
- ENSMUSP00000126730.2, ENSMUST00000172302.8
- Conserved Domains (7) summary
-
- smart00192
Location:71 → 103
- LDLa; Low-density lipoprotein receptor domain class A
- smart00135
Location:508 → 547
- LY; Low-density lipoprotein-receptor YWTD domain
- smart00179
Location:396 → 426
- EGF_CA; Calcium-binding EGF-like domain
- cd00112
Location:33 → 67
- LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
- pfam00057
Location:237 → 273
- Ldl_recept_a; Low-density lipoprotein receptor domain class A
- pfam00058
Location:568 → 608
- Ldl_recept_b; Low-density lipoprotein receptor repeat class B
- pfam14670
Location:360 → 394
- FXa_inhibition; Coagulation Factor Xa inhibitory site
-
NM_001347441.1 → NP_001334370.1 very low-density lipoprotein receptor isoform c precursor
Status: VALIDATED
- Source sequence(s)
-
AC119982, AI451093
- Consensus CDS
-
CCDS84429.1
- UniProtKB/TrEMBL
- F8WGI9, Q3UVX6
- Conserved Domains (7) summary
-
- smart00192
Location:71 → 103
- LDLa; Low-density lipoprotein receptor domain class A
- smart00135
Location:467 → 506
- LY; Low-density lipoprotein-receptor YWTD domain
- smart00179
Location:355 → 385
- EGF_CA; Calcium-binding EGF-like domain
- cd00112
Location:33 → 67
- LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
- pfam00057
Location:196 → 232
- Ldl_recept_a; Low-density lipoprotein receptor domain class A
- pfam00058
Location:527 → 567
- Ldl_recept_b; Low-density lipoprotein receptor repeat class B
- pfam14670
Location:319 → 353
- FXa_inhibition; Coagulation Factor Xa inhibitory site
-
NM_001412816.1 → NP_001399745.1 very low-density lipoprotein receptor isoform c precursor
Status: VALIDATED
- Source sequence(s)
-
AC119982
- UniProtKB/TrEMBL
- F8WGI9, Q3UVX6
- Related
- ENSMUSP00000049145.7, ENSMUST00000047645.13
-
NM_013703.2 → NP_038731.2 very low-density lipoprotein receptor isoform a precursor
See identical proteins and their annotated locations for NP_038731.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer variant and encodes the longer isoform (a).
- Source sequence(s)
-
AC119982, AK036010, AK076172, AK136838, BU504025, U06670
- Consensus CDS
-
CCDS29721.1
- UniProtKB/Swiss-Prot
- P98156, Q64022
- UniProtKB/TrEMBL
-
Q3UVX6
- Related
- ENSMUSP00000127329.2, ENSMUST00000167487.8
- Conserved Domains (7) summary
-
- smart00192
Location:71 → 103
- LDLa; Low-density lipoprotein receptor domain class A
- smart00135
Location:508 → 547
- LY; Low-density lipoprotein-receptor YWTD domain
- smart00179
Location:396 → 426
- EGF_CA; Calcium-binding EGF-like domain
- cd00112
Location:33 → 67
- LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
- pfam00058
Location:568 → 608
- Ldl_recept_b; Low-density lipoprotein receptor repeat class B
- pfam00057
Location:237 → 273
- Ldl_recept_a; Low-density lipoprotein receptor domain class A
- pfam14670
Location:360 → 394
- FXa_inhibition; Coagulation Factor Xa inhibitory site
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000085.7 Reference GRCm39 C57BL/6J
- Range
-
27190070..27231631
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036161519.1 → XP_036017412.1 very low-density lipoprotein receptor isoform X6
- Conserved Domains (5) summary
-
- smart00135
Location:488 → 530
- LY; Low-density lipoprotein-receptor YWTD domain
- smart00179
Location:292 → 322
- EGF_CA; Calcium-binding EGF-like domain
- pfam00057
Location:133 → 169
- Ldl_recept_a; Low-density lipoprotein receptor domain class A
- pfam00058
Location:464 → 504
- Ldl_recept_b; Low-density lipoprotein receptor repeat class B
- pfam14670
Location:256 → 290
- FXa_inhibition; Coagulation Factor Xa inhibitory site
-
XM_006526917.2 → XP_006526980.1 very low-density lipoprotein receptor isoform X1
See identical proteins and their annotated locations for XP_006526980.1
- UniProtKB/Swiss-Prot
- P98156, Q64022
- UniProtKB/TrEMBL
-
Q3UVX6
- Conserved Domains (7) summary
-
- smart00192
Location:71 → 103
- LDLa; Low-density lipoprotein receptor domain class A
- smart00135
Location:508 → 547
- LY; Low-density lipoprotein-receptor YWTD domain
- smart00179
Location:396 → 426
- EGF_CA; Calcium-binding EGF-like domain
- cd00112
Location:33 → 67
- LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
- pfam00058
Location:568 → 608
- Ldl_recept_b; Low-density lipoprotein receptor repeat class B
- pfam00057
Location:237 → 273
- Ldl_recept_a; Low-density lipoprotein receptor domain class A
- pfam14670
Location:360 → 394
- FXa_inhibition; Coagulation Factor Xa inhibitory site
-
XM_030250866.2 → XP_030106726.1 very low-density lipoprotein receptor isoform X2
- UniProtKB/TrEMBL
- Q3UVX6, Q91YY0
- Conserved Domains (7) summary
-
- smart00192
Location:71 → 103
- LDLa; Low-density lipoprotein receptor domain class A
- smart00135
Location:508 → 547
- LY; Low-density lipoprotein-receptor YWTD domain
- smart00179
Location:396 → 426
- EGF_CA; Calcium-binding EGF-like domain
- cd00112
Location:33 → 67
- LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
- pfam00057
Location:237 → 273
- Ldl_recept_a; Low-density lipoprotein receptor domain class A
- pfam00058
Location:568 → 608
- Ldl_recept_b; Low-density lipoprotein receptor repeat class B
- pfam14670
Location:360 → 394
- FXa_inhibition; Coagulation Factor Xa inhibitory site
-
XM_030250868.2 → XP_030106728.1 very low-density lipoprotein receptor isoform X5
- Conserved Domains (5) summary
-
- smart00135
Location:488 → 530
- LY; Low-density lipoprotein-receptor YWTD domain
- smart00179
Location:292 → 322
- EGF_CA; Calcium-binding EGF-like domain
- pfam00058
Location:464 → 504
- Ldl_recept_b; Low-density lipoprotein receptor repeat class B
- pfam00057
Location:133 → 169
- Ldl_recept_a; Low-density lipoprotein receptor domain class A
- pfam14670
Location:256 → 290
- FXa_inhibition; Coagulation Factor Xa inhibitory site
-
XM_006526919.4 → XP_006526982.1 very low-density lipoprotein receptor isoform X3
- UniProtKB/TrEMBL
-
Q3UVX6
- Conserved Domains (7) summary
-
- smart00192
Location:71 → 103
- LDLa; Low-density lipoprotein receptor domain class A
- smart00135
Location:467 → 506
- LY; Low-density lipoprotein-receptor YWTD domain
- smart00179
Location:355 → 385
- EGF_CA; Calcium-binding EGF-like domain
- cd00112
Location:33 → 67
- LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
- pfam00058
Location:527 → 567
- Ldl_recept_b; Low-density lipoprotein receptor repeat class B
- pfam00057
Location:196 → 232
- Ldl_recept_a; Low-density lipoprotein receptor domain class A
- pfam14670
Location:319 → 353
- FXa_inhibition; Coagulation Factor Xa inhibitory site
-
XM_030250865.2 → XP_030106725.1 very low-density lipoprotein receptor isoform X1
- UniProtKB/Swiss-Prot
- P98156, Q64022
- UniProtKB/TrEMBL
-
Q3UVX6
- Conserved Domains (7) summary
-
- smart00192
Location:71 → 103
- LDLa; Low-density lipoprotein receptor domain class A
- smart00135
Location:508 → 547
- LY; Low-density lipoprotein-receptor YWTD domain
- smart00179
Location:396 → 426
- EGF_CA; Calcium-binding EGF-like domain
- cd00112
Location:33 → 67
- LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
- pfam00058
Location:568 → 608
- Ldl_recept_b; Low-density lipoprotein receptor repeat class B
- pfam00057
Location:237 → 273
- Ldl_recept_a; Low-density lipoprotein receptor domain class A
- pfam14670
Location:360 → 394
- FXa_inhibition; Coagulation Factor Xa inhibitory site
-
XM_006526918.4 → XP_006526981.1 very low-density lipoprotein receptor isoform X1
See identical proteins and their annotated locations for XP_006526981.1
- UniProtKB/Swiss-Prot
- P98156, Q64022
- UniProtKB/TrEMBL
-
Q3UVX6
- Conserved Domains (7) summary
-
- smart00192
Location:71 → 103
- LDLa; Low-density lipoprotein receptor domain class A
- smart00135
Location:508 → 547
- LY; Low-density lipoprotein-receptor YWTD domain
- smart00179
Location:396 → 426
- EGF_CA; Calcium-binding EGF-like domain
- cd00112
Location:33 → 67
- LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
- pfam00058
Location:568 → 608
- Ldl_recept_b; Low-density lipoprotein receptor repeat class B
- pfam00057
Location:237 → 273
- Ldl_recept_a; Low-density lipoprotein receptor domain class A
- pfam14670
Location:360 → 394
- FXa_inhibition; Coagulation Factor Xa inhibitory site
-
XM_036161516.1 → XP_036017409.1 very low-density lipoprotein receptor isoform X2
- UniProtKB/TrEMBL
- Q3UVX6, Q91YY0
- Conserved Domains (7) summary
-
- smart00192
Location:71 → 103
- LDLa; Low-density lipoprotein receptor domain class A
- smart00135
Location:508 → 547
- LY; Low-density lipoprotein-receptor YWTD domain
- smart00179
Location:396 → 426
- EGF_CA; Calcium-binding EGF-like domain
- cd00112
Location:33 → 67
- LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
- pfam00057
Location:237 → 273
- Ldl_recept_a; Low-density lipoprotein receptor domain class A
- pfam00058
Location:568 → 608
- Ldl_recept_b; Low-density lipoprotein receptor repeat class B
- pfam14670
Location:360 → 394
- FXa_inhibition; Coagulation Factor Xa inhibitory site
-
XM_036161518.1 → XP_036017411.1 very low-density lipoprotein receptor isoform X6
- Conserved Domains (5) summary
-
- smart00135
Location:488 → 530
- LY; Low-density lipoprotein-receptor YWTD domain
- smart00179
Location:292 → 322
- EGF_CA; Calcium-binding EGF-like domain
- pfam00057
Location:133 → 169
- Ldl_recept_a; Low-density lipoprotein receptor domain class A
- pfam00058
Location:464 → 504
- Ldl_recept_b; Low-density lipoprotein receptor repeat class B
- pfam14670
Location:256 → 290
- FXa_inhibition; Coagulation Factor Xa inhibitory site
RNA
-
XR_386457.4 RNA Sequence
-
XR_003952777.2 RNA Sequence
-
XR_003952778.2 RNA Sequence
-
XR_004940134.1 RNA Sequence