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    LOC105376805 uncharacterized LOC105376805 [ Homo sapiens (human) ]

    Gene ID: 105376805, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC105376805
    Gene description
    uncharacterized LOC105376805
    See related
    Ensembl:ENSG00000238142
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in kidney (RPKM 5.6), fat (RPKM 5.4) and 25 other tissues See more
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    Genomic context

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    See LOC105376805 in Genome Data Viewer
    Location:
    1p36.13
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (16888538..16889666, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (16698966..16700095, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (17215033..17216161, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene putative protein FAM231BP Neighboring gene tRNA-Glu (anticodon TTC) 3-1 Neighboring gene long intergenic non-protein coding RNA 3126 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17201146-17201709 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17201710-17202272 Neighboring gene RNA, U1 small nuclear 5, pseudogene Neighboring gene uncharacterized LOC107985101 Neighboring gene tRNA-Asn (anticodon GTT) 4-1 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17221837-17222770 Neighboring gene RNA, U1 small nuclear 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135056.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AI620898, BM923306, HY134640
      Related
      ENST00000790101.1

    2. NR_135057.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the 3'-terminal exon compared to variant 1.
      Source sequence(s)
      BM923306, HY134640
      Related
      ENST00000790097.1

    3. NR_135058.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate 5'-terminal exon compared to variant 1.
      Source sequence(s)
      BC070363, BM923306, BX284668
      Related
      ENST00000457075.1

    4. NR_135059.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses an alternate 5'-terminal exon and an alternate splice site in the 3'-terminal exon, compared to variant 1.
      Source sequence(s)
      BM923306, BX115769, BX284668
      Related
      ENST00000790089.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      16888538..16889666 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_025791756.1 Reference GRCh38.p14 PATCHES

      Range
      1303691..1304819 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      16698966..16700095 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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