U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    vreI ECF sigma factor VreI [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 878410, updated on 24-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    vreI
    Gene description
    ECF sigma factor VreI
    Locus tag
    PA0675
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_002516.2 (734872..735417)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene heme oxygenase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene sigma factor regulator VreR Neighboring gene HxcW pseudopilin Neighboring gene HxcU pseudopilin

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phosphate starvation relayed by PhoB activates the expression of the Pseudomonas aeruginosa σvreI ECF factor and its target genes. Faure LM, et al. Microbiology (Reading), 2013 Jul. PMID 23657684
    2. A Novel extracytoplasmic function (ECF) sigma factor regulates virulence in Pseudomonas aeruginosa. Llamas MA, et al. PLoS Pathog, 2009 Sep. PMID 19730690, Free PMC Article
    3. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
    4. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
    5. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Phosphate starvation relayed by PhoB activates the expression of the Pseudomonas aeruginosa sigmavreI ECF factor and its target genes.
      Title: Phosphate starvation relayed by PhoB activates the expression of the Pseudomonas aeruginosa σvreI ECF factor and its target genes.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by PseudoCAP

    Function Evidence Code Pubs
    enables sigma factor activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol NAS
    Non-traceable Author Statement
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ECF sigma factor VreI
    NP_249366.1
    • Product name confidence: class 1: Function experimentally demonstrated in P. aeruginosa

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      734872..735417
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_249366.1 ECF sigma factor VreI [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_249366.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A367MD55
      Conserved Domains (1) summary
      COG1595
      Location:1 → 172
      RpoE; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials