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    soxD sarcosine oxidase subunit delta [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 880061, updated on 24-Aug-2024

    Summary

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    Gene symbol
    soxD
    Gene description
    sarcosine oxidase subunit delta
    Locus tag
    PA5417
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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    Genomic context

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    Sequence:
    NC_002516.2 (6096707..6097027)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene serine hydroxymethyltransferase Neighboring gene sarcosine oxidase subunit beta Neighboring gene sarcosine oxidase subunit alpha Neighboring gene sarcosine oxidase subunit gamma Neighboring gene formyltetrahydrofolate deformylase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Role of RelA of Streptococcus mutans in global control of gene expression. Nascimento MM, et al. J Bacteriol, 2008 Jan. PMID 17951382, Free PMC Article
    2. Genetic and functional analyses of PptA, a phospho-form transferase targeting type IV pili in Neisseria gonorrhoeae. Naessan CL, et al. J Bacteriol, 2008 Jan. PMID 17951381, Free PMC Article
    3. Identification of two gene clusters and a transcriptional regulator required for Pseudomonas aeruginosa glycine betaine catabolism. Wargo MJ, et al. J Bacteriol, 2008 Apr. PMID 17951379, Free PMC Article
    4. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
    5. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by PseudoCAP

    Function Evidence Code Pubs
    enables sarcosine oxidase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within sarcosine catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sarcosine oxidase subunit delta
    NP_254104.1
    • class 1: Function experimentally demonstrated in P. aeruginosa

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      6096707..6097027
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_254104.1 sarcosine oxidase subunit delta [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_254104.1

      Status: PROVISIONAL

      Conserved Domains (1) summary
      COG4311
      Location:1 → 96
      SoxD; Sarcosine oxidase delta subunit [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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