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    dgcB dimethylglycine catabolism protein DgcB [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 882141, updated on 24-Aug-2024

    Summary

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    Gene symbol
    dgcB
    Gene description
    dimethylglycine catabolism protein DgcB
    Locus tag
    PA5399
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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    Genomic context

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    Sequence:
    NC_002516.2 (6078044..6080005)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene dimethylglycine catabolism protein DgcA Neighboring gene electron transfer flavoprotein subunit alpha Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of two gene clusters and a transcriptional regulator required for Pseudomonas aeruginosa glycine betaine catabolism. Wargo MJ, et al. J Bacteriol, 2008 Apr. PMID 17951379, Free PMC Article
    2. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
    3. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
    4. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article
    5. A cystic fibrosis epidemic strain of Pseudomonas aeruginosa displays enhanced virulence and antimicrobial resistance. Salunkhe P, et al. J Bacteriol, 2005 Jul. PMID 15995206, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by PseudoCAP

    Function Evidence Code Pubs
    enables dimethylglycine dehydrogenase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables dimethylglycine oxidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within choline catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within glycine betaine catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dimethylglycine catabolism protein DgcB
    NP_254086.1
    • class 1: Function experimentally demonstrated in P. aeruginosa

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      6078044..6080005
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_254086.1 dimethylglycine catabolism protein DgcB [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_254086.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q9HTG5
      Conserved Domains (2) summary
      COG0247
      Location:235 → 632
      GlpC; Fe-S oxidoreductase [Energy production and conversion]
      pfam11982
      Location:23 → 220
      DUF3483; Domain of unknown function (DUF3483)
    Nucleotide Protein
    Heading Accession and Version

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