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    Alyreffm1 Aly/REF export factor family member 1 [ Mus musculus (house mouse) ]

    Gene ID: 70988, updated on 4-Jan-2025

    Summary

    Official Symbol
    Alyreffm1provided by MGI
    Official Full Name
    Aly/REF export factor family member 1provided by MGI
    Primary source
    MGI:MGI:1918238
    See related
    Ensembl:ENSMUSG00000086727 AllianceGenome:MGI:1918238
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930563O14Rik; 4931428L18Rik
    Summary
    Predicted to enable C5-methylcytidine-containing RNA reader activity and mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be located in cytoplasm. Predicted to be part of catalytic step 2 spliceosome; exon-exon junction complex; and transcription export complex. Predicted to be active in nucleus. Predicted to colocalize with chromosome, telomeric region. Orthologous to human ALYREF (Aly/REF export factor). [provided by Alliance of Genome Resources, Jan 2025]
    Expression
    Restricted expression toward testis adult (RPKM 17.8) See more
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    Genomic context

    See Alyreffm1 in Genome Data Viewer
    Location:
    1 B; 1 11.52 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (31180159..31261737, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (31141078..31222656, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene THO complex 4 pseudogene Neighboring gene predicted gene 29669 Neighboring gene predicted gene 28644 Neighboring gene STARR-seq mESC enhancer starr_00518 Neighboring gene protein kinase inhibitor, gamma pseudogene Neighboring gene lengsin, lens protein with glutamine synthetase domain Neighboring gene dynein axonemal assembly factor 6, retrotransposed Neighboring gene predicted gene, 26145

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables C5-methylcytidine-containing RNA reader activity  
    enables mRNA binding  
    Process Evidence Code Pubs
    involved_in RNA export from nucleus  
    involved_in mRNA export from nucleus  
    involved_in mRNA export from nucleus  
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome  
    colocalizes_with chromosome, telomeric region  
    located_in cytoplasm  
    part_of exon-exon junction complex  
    is_active_in nucleus  
    located_in nucleus  
    part_of transcription export complex  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033445.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AK016212, AK016483, BC147546
      Related
      ENSMUST00000127775.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      31180159..31261737 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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