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    Gm16958 predicted gene, 16958 [ Mus musculus (house mouse) ]

    Gene ID: 100862268, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm16958provided by MGI
    Official Full Name
    predicted gene, 16958provided by MGI
    Primary source
    MGI:MGI:4439882
    See related
    Ensembl:ENSMUSG00000097456 AllianceGenome:MGI:4439882
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm16958 in Genome Data Viewer
    Location:
    3 G2; 3 56.07 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (126954954..126961939)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (127161305..127168290)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene calcium/calmodulin-dependent protein kinase II, delta Neighboring gene STARR-positive B cell enhancer mm9_chr3:126393622-126393923 Neighboring gene STARR-positive B cell enhancer ABC_E9571 Neighboring gene VISTA enhancer mm1653 Neighboring gene predicted gene 15551 Neighboring gene STARR-positive B cell enhancer mm9_chr3:126454256-126454557 Neighboring gene STARR-positive B cell enhancer ABC_E11215 Neighboring gene STARR-positive B cell enhancer mm9_chr3:126474504-126474805 Neighboring gene STARR-positive B cell enhancer ABC_E11216 Neighboring gene STARR-seq mESC enhancer starr_08938 Neighboring gene STARR-seq mESC enhancer starr_08939 Neighboring gene STARR-positive B cell enhancer mm9_chr3:126606343-126606644 Neighboring gene STARR-seq mESC enhancer starr_08940 Neighboring gene STARR-seq mESC enhancer starr_08941 Neighboring gene ankyrin 2, brain Neighboring gene predicted gene, 25501 Neighboring gene STARR-seq mESC enhancer starr_08943 Neighboring gene STARR-seq mESC enhancer starr_08946 Neighboring gene STARR-seq mESC enhancer starr_08947 Neighboring gene STARR-positive B cell enhancer mm9_chr3:127025925-127026226 Neighboring gene STARR-seq mESC enhancer starr_08948 Neighboring gene predicted gene, 52631 Neighboring gene STARR-seq mESC enhancer starr_08950 Neighboring gene predicted gene, 35535

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_105029.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AK029402, AK138534, BB750343

    2. NR_105030.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon compared to variant 1.
      Source sequence(s)
      AK138534, BB750343
      Related
      ENSMUST00000180603.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      126954954..126961939
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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