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    Cnn2 calponin 2 [ Mus musculus (house mouse) ]

    Gene ID: 12798, updated on 27-Nov-2024

    Summary

    Official Symbol
    Cnn2provided by MGI
    Official Full Name
    calponin 2provided by MGI
    Primary source
    MGI:MGI:105093
    See related
    Ensembl:ENSMUSG00000004665 AllianceGenome:MGI:105093
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Calpo2
    Summary
    Predicted to enable actin filament binding activity. Acts upstream of or within several processes, including negative regulation of macrophage migration; negative regulation of phagocytosis; and regulation of mononuclear cell proliferation. Predicted to be located in stress fiber. Predicted to be active in actin cytoskeleton. Is expressed in several structures, including 4-cell stage embryo; central nervous system; eye; forelimb; and lateral plate mesoderm. Orthologous to human CNN2 (calponin 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in lung adult (RPKM 223.3), spleen adult (RPKM 194.6) and 21 other tissues See more
    Orthologs
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    Genomic context

    See Cnn2 in Genome Data Viewer
    Location:
    10 C1; 10 39.72 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (79824434..79831234)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (79988600..79995400)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene glutamate receptor, ionotropic, NMDA3B Neighboring gene transmembrane protein 259 Neighboring gene STARR-positive B cell enhancer ABC_E720 Neighboring gene STARR-positive B cell enhancer ABC_E6879 Neighboring gene STARR-positive B cell enhancer ABC_E2947 Neighboring gene predicted gene, 26243 Neighboring gene STARR-positive B cell enhancer ABC_E1805 Neighboring gene ATP-binding cassette, sub-family A member 7 Neighboring gene Rho GTPase activating protein 45 Neighboring gene STARR-positive B cell enhancer ABC_E2948

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (4)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables actin filament binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in actin filament organization IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in actomyosin structure organization IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within cellular response to mechanical stimulus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    acts_upstream_of establishment of localization in cell IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within hemopoiesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of macrophage migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within negative regulation of macrophage migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within negative regulation of phagocytosis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of phagocytosis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within regulation of actin filament-based process ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    acts_upstream_of_or_within regulation of leukocyte proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within regulation of mononuclear cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within wound healing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in actin cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in stress fiber ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    calponin-2
    Names
    calponin H2, smooth muscle
    h2-calponin
    neutral calponin

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_007725.2NP_031751.1  calponin-2

      See identical proteins and their annotated locations for NP_031751.1

      Status: VALIDATED

      Source sequence(s)
      AK051845, BE656517, CB590846
      Consensus CDS
      CCDS24003.1
      UniProtKB/Swiss-Prot
      Q08093
      UniProtKB/TrEMBL
      D3Z7R6, Q543F3
      Related
      ENSMUSP00000004784.5, ENSMUST00000004784.11
      Conserved Domains (2) summary
      pfam00402
      Location:166190
      Calponin; Calponin family repeat
      cd21283
      Location:27135
      CH_CNN2; calponin homology (CH) domain found in calponin-2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      79824434..79831234
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)