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    Gm1976 predicted gene 1976 [ Mus musculus (house mouse) ]

    Gene ID: 100038746, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm1976provided by MGI
    Official Full Name
    predicted gene 1976provided by MGI
    Primary source
    MGI:MGI:3780145
    See related
    Ensembl:ENSMUSG00000066057 AllianceGenome:MGI:3780145
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    100038868
    Expression
    Broad expression in cortex adult (RPKM 9.9), frontal lobe adult (RPKM 8.0) and 21 other tissues See more
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    Genomic context

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    See Gm1976 in Genome Data Viewer
    Location:
    17 E5; 17 61.19 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (95067370..95142227, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (94759942..94834799, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 41655 Neighboring gene STARR-seq mESC enhancer starr_43642 Neighboring gene STARR-seq mESC enhancer starr_43643 Neighboring gene STARR-seq mESC enhancer starr_43644 Neighboring gene methyltransferase 4, N6-adenosine Neighboring gene NDC80 homolog, kinetochore complex component pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr17:95148921-95149221 Neighboring gene STARR-positive B cell enhancer mm9_chr17:95149244-95149545 Neighboring gene STARR-positive B cell enhancer ABC_E8926 Neighboring gene S-adenosylmethionine decarboxylase, pseudogene 7 Neighboring gene STARR-positive B cell enhancer mm9_chr17:95233967-95234268 Neighboring gene STARR-positive B cell enhancer mm9_chr17:95235804-95236104 Neighboring gene STARR-seq mESC enhancer starr_43645 Neighboring gene signal recognition particle 19 kDa protein pseudogene Neighboring gene predicted gene, 20939 Neighboring gene predicted gene, 23102

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045963.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AI843729, AK082664, AK137318
      Related
      ENSMUST00000234189.3

    2. NR_045964.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal exon in the 3' region, compared to variant 1.
      Source sequence(s)
      AI843729, AK082664, AK137318
      Related
      ENSMUST00000182639.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      95067370..95142227 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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