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    Selenov selenoprotein V [ Mus musculus (house mouse) ]

    Gene ID: 280621, updated on 27-Dec-2024

    Summary

    Official Symbol
    Selenovprovided by MGI
    Official Full Name
    selenoprotein Vprovided by MGI
    Primary source
    MGI:MGI:3608324
    See related
    Ensembl:ENSMUSG00000046750 AllianceGenome:MGI:3608324
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Selv
    Summary
    This gene encodes a selenoprotein containing a selenocysteine (Sec) residue, which is encoded by the UGA codon that normally signals translation termination. The 3' UTRs of selenoprotein mRNAs contain a conserved stem-loop structure, the Sec insertion sequence (SECIS) element, which is necessary for the recognition of UGA as a Sec codon rather than as a stop signal. This protein is specifically expressed in the testis. It belongs to the SelWTH family, which possesses a thioredoxin-like fold and a conserved CxxU (C is cysteine, U is Sec) motif, suggesting a redox function for this gene. [provided by RefSeq, Apr 2017]
    Expression
    Restricted expression toward testis adult (RPKM 175.4) See more
    Orthologs
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    Genomic context

    See Selenov in Genome Data Viewer
    Location:
    7 A3; 7 16.67 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (27984077..27990611, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (28284652..28291186, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene EP300 interacting inhibitor of differentiation 2 Neighboring gene STARR-positive B cell enhancer ABC_E4912 Neighboring gene EP300 interacting inhibitor of differentiation 2B Neighboring gene delta like canonical Notch ligand 3 Neighboring gene translocase of inner mitochondrial membrane 50 Neighboring gene STARR-positive B cell enhancer ABC_E6527 Neighboring gene predicted gene, 51445

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    General gene information

    Clone Names

    • MGC107154

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in response to selenium ion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175033.4NP_778198.2  selenoprotein V

      See identical proteins and their annotated locations for NP_778198.2

      Status: REVIEWED

      Source sequence(s)
      AK077113, BC089491
      Consensus CDS
      CCDS39855.1
      UniProtKB/TrEMBL
      D3YXG1, Q5FWB9
      Related
      ENSMUSP00000050372.9, ENSMUST00000056589.15
      Conserved Domains (1) summary
      TIGR02174
      Location:247320
      CXXU_selWTH; selT/selW/selH selenoprotein domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      27984077..27990611 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)