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    rorf8 T3SS component [ Escherichia coli O157:H7 str. Sakai ]

    Gene ID: 915456, updated on 10-Oct-2024

    Summary

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    Gene symbol
    rorf8
    Gene description
    T3SS component
    Locus tag
    ECs_4572
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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    Genomic context

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    Sequence:
    NC_002695.2 (4610088..4610465)

    NC_002695.2Genomic Context describing neighboring genes Neighboring gene T3SS structure protein EscV Neighboring gene regulator Mpc Neighboring gene T3SS secreted effector EspZ Neighboring gene T3SS structure protein EscJ Neighboring gene T3SS secretion switching protein SepD Neighboring gene T3SS structure protein EscC

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002695.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
    2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
    3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
    4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    T3SS component

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002695.2 Reference assembly

      Range
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_312599.2 T3SS component [Escherichia coli O157:H7 str. Sakai]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0H3JJE6, A0A4P8B590, A0A4P8BW39, O85634
      Conserved Domains (1) summary
      TIGR02497
      Location:87 → 125
      yscI_hrpB_dom; type III secretion apparatus protein, YscI/HrpB, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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