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    ydfR protein YdfR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946095, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydfR
    Official Full Name
    protein YdfR
    Primary source
    ECOCYC:G6828
    Locus tag
    b1555
    See related
    ASAP:ABE-0005192
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1549
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    Genomic context

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    Sequence:
    NC_000913.3 (1640054..1640365, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene cold shock-like protein CspI Neighboring gene DUF2514 domain-containing protein RzpQ Neighboring gene putative lipoprotein RzoQ Neighboring gene putative lysozyme Neighboring gene putative prophage lysis protein EssQ Neighboring gene putative zinc-binding protein YnfU

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    2. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein YdfR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1640054..1640365 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416073.1 protein YdfR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416073.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A3L5GYJ2
      Conserved Domains (1) summary
      pfam07041
      Location:1 → 93
      DUF1327; Protein of unknown function (DUF1327)
    Nucleotide Protein
    Heading Accession and Version

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