U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Carbohydrate-binding X8 domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843005, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Carbohydrate-binding X8 domain superfamily protein
    Primary source
    TAIR:AT1G66870
    Locus tag
    AT1G66870
    See related
    Araport:AT1G66870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4N21.2; F4N21_2
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (24945484..24946968, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene Class I glutamine amidotransferase-like superfamily protein Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene 50S ribosomal-like protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Marker and readout genes for defense priming in Pseudomonas cannabina pv. alisalensis interaction aid understanding systemic immunity in Arabidopsis. Sistenich AJ, et al. Sci Rep, 2024 Feb 12. PMID 38347062, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001334251.1
    NM_105358.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within priming of cellular response to stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Carbohydrate-binding X8 domain superfamily protein
    NP_176859.1
    • Carbohydrate-binding X8 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT1G66852.1); Has 1407 Blast hits to 1359 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 1390; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24945484..24946968 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105358.2 → NP_176859.1  Carbohydrate-binding X8 domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176859.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6P1, Q9C9N9
      Conserved Domains (1) summary
      smart00768
      Location:25 → 110
      X8; Possibly involved in carbohydrate binding

    2. NM_001334251.1 → NP_001321897.1  Carbohydrate-binding X8 domain superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASF8
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools