U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Hddc3 HD domain containing 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 308758, updated on 27-Nov-2024

    Summary

    Official Symbol
    Hddc3provided by RGD
    Official Full Name
    HD domain containing 3provided by RGD
    Primary source
    RGD:1311839
    See related
    EnsemblRapid:ENSRNOG00000012236 AllianceGenome:RGD:1311839
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311839
    Summary
    Predicted to enable guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity. Orthologous to human HDDC3 (HD domain containing 3). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Heart (RPKM 168.2), Kidney (RPKM 134.9) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Hddc3 in Genome Data Viewer
    Location:
    1q31
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (143708703..143711010)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (134299469..134301757)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (142136428..142138737)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene unc-45 myosin chaperone A Neighboring gene shisa like 3 Neighboring gene ribosomal protein L35A like 7 Neighboring gene mannosidase, alpha, class 2A, member 2 Neighboring gene FES proto-oncogene, tyrosine kinase

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
    Names
    HD domain-containing protein 3
    NP_001100998.1
    XP_006229493.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107528.1NP_001100998.1  guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1

      See identical proteins and their annotated locations for NP_001100998.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473980
      UniProtKB/TrEMBL
      A6JCA5, D4A500
      Conserved Domains (1) summary
      COG0317
      Location:4130
      SpoT; (p)ppGpp synthase/hydrolase, HD superfamily [Signal transduction mechanisms, Transcription]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      143708703..143711010
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006229431.3XP_006229493.1  guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZQC5
      Related
      ENSRNOP00000016445.5, ENSRNOT00000016445.7
      Conserved Domains (2) summary
      COG0317
      Location:495
      SpoT; (p)ppGpp synthase/hydrolase, HD superfamily [Signal transduction mechanisms, Transcription]
      cl21469
      Location:3103
      HDc; Metal dependent phosphohydrolases with conserved 'HD' motif