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    Ccdc177 coiled-coil domain containing 177 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500686, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Ccdc177provided by RGD
    Official Full Name
    coiled-coil domain containing 177provided by RGD
    Primary source
    RGD:1561115
    See related
    EnsemblRapid:ENSRNOG00000033973 AllianceGenome:RGD:1561115
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561115
    Summary
    Orthologous to human CCDC177 (coiled-coil domain containing 177). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 28.2), Lung (RPKM 3.5) and 4 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc177 in Genome Data Viewer
    Location:
    6q24
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (106135827..106142413, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (100404526..100411112, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (104403617..104410991, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479447 Neighboring gene solute carrier family 39, member 9 Neighboring gene pleckstrin homology and coiled-coil domain containing D1 Neighboring gene sushi domain containing 6 Neighboring gene serine and arginine rich splicing factor 5 Neighboring gene solute carrier family 10 member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 177

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399190.1 → NP_001386119.1  coiled-coil domain-containing protein 177

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      D4A8V2
      Related
      ENSRNOP00000045958.1, ENSRNOT00000040965.3
      Conserved Domains (1) summary
      pfam15558
      Location:328 → 701
      DUF4659; Domain of unknown function (DUF4659)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      106135827..106142413 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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