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    C8h3orf62 similar to human chromosome 3 open reading frame 62 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498675, updated on 27-Nov-2024

    Summary

    Official Symbol
    C8h3orf62provided by RGD
    Official Full Name
    similar to human chromosome 3 open reading frame 62provided by RGD
    Primary source
    RGD:1589651
    See related
    EnsemblRapid:ENSRNOG00000046155 AllianceGenome:RGD:1589651
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in spermatogenesis. Orthologous to human C3orf62 (chromosome 3 open reading frame 62). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 459.1) and Kidney (RPKM 16.2) See more
    Orthologs
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    Genomic context

    See C8h3orf62 in Genome Data Viewer
    Location:
    8q32
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (117958583..117963137)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (109080032..109084588)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (117170620..117175235)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene glutathione peroxidase 1 Neighboring gene ubiquitin specific peptidase 4 Neighboring gene interactor of HORMAD1 1 Neighboring gene uncharacterized LOC134480234 Neighboring gene small nucleolar RNA SNORA70

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    uncharacterized protein C3orf62 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109113.2NP_001102583.1  uncharacterized protein C3orf62 homolog

      See identical proteins and their annotated locations for NP_001102583.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6I351, M0RBA6
      Related
      ENSRNOP00000066835.1, ENSRNOT00000075271.3
      Conserved Domains (1) summary
      pfam15830
      Location:1246
      DUF4712; Domain of unknown function (DUF4712)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      117958583..117963137
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017595813.3XP_017451302.1  uncharacterized protein C3orf62 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZVE8
      Related
      ENSRNOP00000093480.2, ENSRNOT00000095427.2