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    Zfp84 zinc finger protein 84 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 308482, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Zfp84provided by RGD
    Official Full Name
    zinc finger protein 84provided by RGD
    Primary source
    RGD:1309815
    See related
    EnsemblRapid:ENSRNOG00000029043 EnsemblRapid:ENSRNOG00000055519 AllianceGenome:RGD:1309815
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Znf30; Zfp790; AABR07002868.1
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to several human genes including ZFP30 (ZFP30 zinc finger protein). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 60.8), Spleen (RPKM 54.9) and 9 other tissues See more
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    Genomic context

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    See Zfp84 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (94114782..94144057)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (84987352..85015478)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (87647051..87662033)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134485107 Neighboring gene ubiquitin-conjugating enzyme E2N, pseudogene 3 Neighboring gene zinc finger protein 420-like Neighboring gene ribosomal protein L4, pseudogene 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 570
    Names
    ZFP30 zinc finger protein
    zinc finger protein 30
    zinc finger protein 790

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107500.3 → NP_001100970.1  zinc finger protein 570

      See identical proteins and their annotated locations for NP_001100970.1

      Status: VALIDATED

      Source sequence(s)
      FQ196558, JAXUCZ010000001
      UniProtKB/TrEMBL
      A6J9R4, D3ZD53
      Related
      ENSRNOP00000029398.7, ENSRNOT00000035994.8
      Conserved Domains (5) summary
      smart00349
      Location:14 → 73
      KRAB; krueppel associated box
      COG5048
      Location:243 → 559
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:447 → 467
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:14 → 53
      KRAB; KRAB box
      pfam13465
      Location:515 → 540
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      94114782..94144057
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039111585.2 → XP_038967513.1  zinc finger protein 570 isoform X3

      Conserved Domains (3) summary
      smart00349
      Location:14 → 73
      KRAB; krueppel associated box
      COG5048
      Location:243 → 607
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:447 → 467
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_006228698.4 → XP_006228760.1  zinc finger protein 570 isoform X1

      See identical proteins and their annotated locations for XP_006228760.1

      UniProtKB/TrEMBL
      A0A0G2K1C5, A6J9R5
      Related
      ENSRNOP00000071787.2, ENSRNOT00000088772.3
      Conserved Domains (5) summary
      smart00349
      Location:21 → 82
      KRAB; krueppel associated box
      COG5048
      Location:185 → 548
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:469 → 489
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:21 → 60
      KRAB; KRAB box
      pfam13465
      Location:202 → 226
      zf-H2C2_2; Zinc-finger double domain

    3. XM_039111584.2 → XP_038967512.1  zinc finger protein 570 isoform X2

      Conserved Domains (3) summary
      smart00349
      Location:21 → 81
      KRAB; krueppel associated box
      COG5048
      Location:184 → 547
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:468 → 488
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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