U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Oxnad1 oxidoreductase NAD-binding domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 306270, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Oxnad1provided by RGD
    Official Full Name
    oxidoreductase NAD-binding domain containing 1provided by RGD
    Primary source
    RGD:1311534
    See related
    EnsemblRapid:ENSRNOG00000019760 AllianceGenome:RGD:1311534
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311534
    Summary
    Predicted to enable oxidoreductase activity. Predicted to be located in mitochondrion. Orthologous to human OXNAD1 (oxidoreductase NAD binding domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Heart (RPKM 154.4), Kidney (RPKM 132.3) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Oxnad1 in Genome Data Viewer
    Location:
    16p16
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (7299755..7328824)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (7293470..7322540)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (8207223..8236292)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134482453 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 15 Neighboring gene diphthamide biosynthesis 3 Neighboring gene transfer RNA valine (anticodon AAC) 12 Neighboring gene uncharacterized LOC134482455 Neighboring gene microseminoprotein, beta Neighboring gene poly (ADP-ribose) glycohydrolase like 1 Neighboring gene nuclear receptor coactivator 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context. Morgenstern M, et al. Cell Metab, 2021 Dec 7. PMID 34800366, Free PMC Article
    2. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    oxidoreductase NAD-binding domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107295.1 → NP_001100765.1  oxidoreductase NAD-binding domain-containing protein 1

      See identical proteins and their annotated locations for NP_001100765.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474046
      UniProtKB/TrEMBL
      A6KFX2, D4A0Y4
      Related
      ENSRNOP00000026751.4, ENSRNOT00000026751.8
      Conserved Domains (1) summary
      cd00322
      Location:92 → 331
      FNR_like; Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport ...

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      7299755..7328824
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006252624.5 → XP_006252686.1  oxidoreductase NAD-binding domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006252686.1

      UniProtKB/TrEMBL
      A0A0G2K466, A6KFX3
      Conserved Domains (1) summary
      cd00322
      Location:68 → 307
      FNR_like; Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport ...

    2. XM_006252625.5 → XP_006252687.1  oxidoreductase NAD-binding domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006252687.1

      UniProtKB/TrEMBL
      A0A0G2K466, A6KFX3
      Related
      ENSRNOP00000072924.1, ENSRNOT00000079609.3
      Conserved Domains (1) summary
      cd00322
      Location:68 → 307
      FNR_like; Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport ...

    3. XM_006252626.5 → XP_006252688.1  oxidoreductase NAD-binding domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006252688.1

      UniProtKB/TrEMBL
      A0A0G2K466, A6KFX3
      Conserved Domains (1) summary
      cd00322
      Location:68 → 307
      FNR_like; Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport ...

    4. XM_063275356.1 → XP_063131426.1  oxidoreductase NAD-binding domain-containing protein 1 isoform X3

    5. XM_006252623.5 → XP_006252685.1  oxidoreductase NAD-binding domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006252685.1

      UniProtKB/TrEMBL
      A0A0G2K466, A6KFX3
      Conserved Domains (1) summary
      cd00322
      Location:68 → 307
      FNR_like; Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport ...

    6. XM_063275355.1 → XP_063131425.1  oxidoreductase NAD-binding domain-containing protein 1 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools