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    Cmtm5 CKLF-like MARVEL transmembrane domain containing 5 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 290214, updated on 27-Nov-2024

    Summary

    Official Symbol
    Cmtm5provided by RGD
    Official Full Name
    CKLF-like MARVEL transmembrane domain containing 5provided by RGD
    Primary source
    RGD:1307045
    See related
    EnsemblRapid:ENSRNOG00000016828 AllianceGenome:RGD:1307045
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Cklfsf5
    Summary
    Predicted to act upstream of or within negative regulation of myoblast differentiation. Predicted to be active in membrane. Orthologous to human CMTM5 (CKLF like MARVEL transmembrane domain containing 5). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 171.5), Heart (RPKM 16.3) and 1 other tissue See more
    Orthologs
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    Genomic context

    See Cmtm5 in Genome Data Viewer
    Location:
    15p13
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (32382171..32385288)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (28412624..28415304)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (33600016..33602839)

    Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene embryonal Fyn-associated substrate Neighboring gene interleukin 25 Neighboring gene uncharacterized LOC108352923 Neighboring gene myosin heavy chain 6 Neighboring gene microRNA 3546 Neighboring gene microRNA 208a Neighboring gene uncharacterized LOC120096985 Neighboring gene myosin heavy chain 7 Neighboring gene microRNA 208b

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    CKLF-like MARVEL transmembrane domain-containing protein 5
    Names
    chemokine-like factor super family 5

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106034.2NP_001099504.2  CKLF-like MARVEL transmembrane domain-containing protein 5

      See identical proteins and their annotated locations for NP_001099504.2

      Status: VALIDATED

      Source sequence(s)
      AI715540, CX569344, FM029909
      UniProtKB/TrEMBL
      A6KGX8
      Conserved Domains (1) summary
      pfam01284
      Location:29139
      MARVEL; Membrane-associating domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086033.1 Reference GRCr8

      Range
      32382171..32385288
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063274121.1XP_063130191.1  CKLF-like MARVEL transmembrane domain-containing protein 5 isoform X2

    2. XM_063274122.1XP_063130192.1  CKLF-like MARVEL transmembrane domain-containing protein 5 isoform X3

      UniProtKB/TrEMBL
      D3ZQ46
      Related
      ENSRNOP00000022664.7, ENSRNOT00000022664.9
    3. XM_063274120.1XP_063130190.1  CKLF-like MARVEL transmembrane domain-containing protein 5 isoform X1